PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011100220.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

TCP

Protein Properties

Length: 306aa MW: 33403.8 Da PI: 6.8554

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011100220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.8	1.3e-36	24	139	3	100
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssas....nsssg.. 88 g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l++++ s+a+++ + s s+ ++ ++s++ XP_011100220.1 24 GRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKTAIDKLNQLPPSQANHSnhlAPTSGSNDHQlpldQQSETpp 118 89*************************************************************55554444333222222222222212222245 PP TCP 89 .........kaaksaakskks 100 +++ ++++++ XP_011100220.1 119 gyqllannpNSSFMGPPGEPD 139 555555554333333344444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.8E-32	24	104	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.064	25	83	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MKSTIREGGE ITQVQGGQIL RSIGRKDRHS KVYTSKGPRD RRVRLSAHTA IQFYDVQDRL 60 GYDRPSKAVD WLINKAKTAI DKLNQLPPSQ ANHSNHLAPT SGSNDHQLPL DQQSETPPGY 120 QLLANNPNSS FMGPPGEPDA HLENTMKSFF PTSSLGSFPG FSSDSVSRAP FQAQDLGLSL 180 HTLHSDNHDH GNAGNPVLPL HETFQRIGGW NSGGDMDGRV GFLMNSQEIS QQALFPQGLP 240 FSHRELLLSN IAAHQAWNQR PFLGSSDEQN PDPSGPPQSS DFGSPSGLGF RVPARIYGEE 300 EPGTRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100220.1	0.0	PREDICTED: transcription factor TCP10-like
Swissprot	O82277	1e-50	TCP10_ARATH; Transcription factor TCP10
TrEMBL	A0A067K9Y1	7e-77	A0A067K9Y1_JATCU; Uncharacterized protein
STRING	POPTR_0013s12370.1	1e-65	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6607	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	6e-52	TCP domain protein 10